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BioTAGME: A comprehensive platform for biological knowledge network analysis
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Data and Resources
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Personal Data Attributes
Field | Value |
---|---|
Anonymised | No |
ChildrenData | No |
Cross Border Authorised | Yes |
Data Protection Impact Assessment | No |
Ethics Committee Approval | No |
General Data | Yes |
Informed Consent Template | No |
Non Personal Data Explanation | This Network was built through BioTAGME, a system that combines TAGME, an entity-annotation framework based on Wikipedia corpus with a network-based inference methodology (i.e., DT-Hybrid).BioTAGME exploits several Biological Ontologies as "ground truth" of significant bio-entities, such as DisGeNET, DrugBank, STRING and many more. We Deployed BioTAGME on PubMed, where the aim was on extracting biological entities and their relations from titles and abstracts.Biological entities are the nodes of our graph, while edges are the relations between them.Edges are of three categories:Literature edges: interactions derived from publications.STRING: protein-protein associations stored in the STRING database.BioTAGME: interactions predicted by our tool. |
Personal Data | No |
Personal data was manifestly made public by the data subject | No |
Sensitive Data | No |
Additional Info
Field | Value |
---|---|
Accessibility | Both |
Accessibility Mode | Download |
Availability | On-Line |
Basic rights | Download |
Creation Date | 2022-03-03 |
Creator | Ferragina, Paolo, paolo.ferragina@unipi.it, orcid.org/0000-0003-1353-360X |
Dataset Citation | Antonio Di Maria, Salvatore Alaimo, Lorenzo Bellomo, Fabrizio Billeci, Paolo Ferragina, Alfredo Ferro, & Alfredo Pulvirenti. (2022). BioTAGME: A comprehensive platform for biological knowledge network analysis (1.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.6325345 |
Dataset Re-Use Safeguards | None |
Field/Scope of use | Any use |
Group | Health Studies |
Language | eng, English |
License term | 2022-03-03 /2024-01-01 |
Manifestation Type | Original |
Processing Degree | Primary |
Retention Period | 2022-03-03 /2024-01-01 |
SoBigData Node | SoBigData EU |
Sublicense rights | No |
Territory of use | World Wide |
Thematic Cluster | Social Network Analysis [SNA] |
Thematic Cluster | Text and Social Media Mining [TSMM] |
system:type | Dataset |
Management Info
Field | Value |
---|---|
Author | Pellungrini Roberto |
Maintainer | Pellungrini Roberto |
Version | 1 |
Last Updated | 23 October 2023, 12:13 (CEST) |
Created | 18 March 2022, 11:34 (CET) |